myPapers.bib

@comment{{x-kbibtex-personnameformatting=<%l><, %f>}}
@inproceedings{bardak2017,
  author = {Bardak, B. and Tan, M.},
  title = {Disease outbreak prediction by data integration and multi-task learning},
  booktitle = {IEEE International Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB)},
  year = {2017}
}
@article{tan2017edge,
  title = {Edge distance graph kernel and its application to small molecule classification},
  author = {Tan, M.},
  journal = {Turkish Journal of Electrical Engineering \& Computer Sciences},
  volume = {25},
  number = {3},
  pages = {2479--2490},
  year = {2017},
  publisher = {The Scientific and Technological Research Council of Turkey}
}
@article{tan2016,
  author = {Tan, M.},
  title = {Prediction of anti-cancer drug response by kernelized multi-task learning },
  journal = {Artificial Intelligence in Medicine },
  volume = {73},
  number = {},
  pages = {70 - 77},
  year = {2016},
  issn = {0933-3657},
  doi = {http://dx.doi.org/10.1016/j.artmed.2016.09.004},
  url = {http://www.sciencedirect.com/science/article/pii/S0933365716301920}
}
@inproceedings{tolan2016,
  author = {Tolan, E. and Tan, M.},
  booktitle = {{International Conference on Knowledge Discovery and Information Retrieval}},
  title = {Anti-cancer drug activity prediction by ensemble learning},
  year = {2016}
}
@article{pancaroglu2016,
  title = {Biological Network Derivation by Positive Unlabeled Learning Algorithms},
  journal = {Current Bioinformatics},
  volume = {11},
  number = {5},
  pages = {531-536},
  year = {2016},
  doi = {10.2174/1574893611666160617093509},
  url = {http://www.eurekaselect.com/node/143364/article},
  author = {Pancaroglu, D. and Tan, M.}
}
@article{sirin2016,
  author = {Sirin, U. and Erdogdu, U. and Polat, F. and Tan, M. and Alhajj, R.},
  journal = {Artificial Intelligence in Medicine},
  title = {Effective gene expression data generation framework based on multi-model approach},
  volume = {70},
  pages = {41--61},
  year = {2016}
}
@article{gao2016,
  title = {Multi-scale modularity and motif distributional effect in metabolic networks},
  journal = {Current Protein & Peptide Science},
  volume = {17},
  number = {1},
  pages = {82-92},
  year = {2016},
  doi = {10.2174/1389203716666150923104603},
  url = {http://www.eurekaselect.com/node/135160/article},
  author = {Gao, S. and Chen, A. and Rahmani, A. and Zeng, J. and Tan, M. and Alhajj, R. and Rokne, J. and Demetrick, D. and Wei, X.}
}
@inproceedings{bardak2015,
  author = {Bardak, B. and Tan, M.},
  booktitle = {{IEEE International Conference on Bioinformatics & Bioengineering (BIBE 2015)}},
  title = {{Prediction of Influenza Outbreaks by Integrating Wikipedia Article Access Logs and Google Flu Trend Data}},
  year = {2015}
}
@inproceedings{gokcer2015,
  author = {Gokcer, Y. and Demirci, M.F. and Tan, M.},
  booktitle = {{6th International Conference on Bioinformatics Models, Methods, and Algorithms}},
  title = {{Graph-based Pattern Recognition for Chemical Molecule Matching}},
  year = {2015}
}
@inproceedings{tan2014,
  author = {Tan, M.},
  booktitle = {{IEEE International Conference on Bioinformatics and Biomedicine (BIBM 2014)}},
  title = {{Drug sensitivity prediction for cancer cell lines based on pairwise kernels and miRNA profiles}},
  pages = {156--161},
  year = {2014}
}
@inproceedings{pancaroglu2014improving,
  author = {Pancaroglu, D. and Tan, M.},
  booktitle = {{8th International Conference on Practical Applications of Computational Biology \& Bioinformatics (PACBB 2014)}},
  pages = {81--88},
  title = {{Improving Positive Unlabeled Learning Algorithms for Protein Interaction Prediction}},
  year = {2014}
}
@article{alhajj-ijdmb,
  author = {Erdo\u{g}du, U. and Tan, M. and Alhajj, R. and Polat, F. and Rokne, J. and Demetrick, D.},
  doi = {10.1504/IJDMB.2013.056090},
  journal = {International Journal of Data Mining and Bioinformatics},
  number = {3},
  pages = {247--281},
  title = {{Integrating Machine Learning Techniques into Robust Data Enrichment Approach and Its Application to Gene Expression Data}},
  volume = {8},
  year = {2013}
}
@article{tan-ijdmb,
  author = {Tan, M. and Alhajj, R. and Polat, F.},
  doi = {10.1504/IJDMB.2013.056080},
  journal = {International Journal of Data Mining and Bioinformatics},
  number = {3},
  pages = {294--310},
  title = {{Subtree selection in kernels for graph classification}},
  volume = {8},
  year = {2013}
}
@inproceedings{tan-2013,
  author = {Tan, M.},
  booktitle = {{Proceedings of International Conference on Bioinformatics and Computational Biology (BICOB)}},
  owner = {mehmet},
  timestamp = {2013.01.07},
  title = {{Information theoretic feature selection for {W}eisfeiler-{L}ehman graph kernels}},
  year = {2013}
}
@article{kilic-2012,
  author = {K{\i}l{\i}\c{c}, C. and Tan, M.},
  journal = {Network Modeling Analysis in Health Informatics and Bioinformatics},
  number = {3},
  owner = {mehmet},
  pages = {87--102},
  timestamp = {2012.10.30},
  title = {{Positive unlabeled learning for deriving protein interaction networks}},
  volume = {1},
  year = {2012}
}
@article{shalalfa-smcc,
  author = {Alshalalfa, M. and Tan, M. and Naji, G. and Alhajj, R. and Polat, F. and Rokne, J.},
  doi = {10.1109/TSMCC.2012.2186801},
  journal = {IEEE Transactions on Systems, Man and Cybernetics, Part C},
  owner = {mehmet},
  pages = {1354--1364},
  timestamp = {2012.05.14},
  title = {{Revealing miRNA Regulation and miRNA Target Prediction Using Constraint-Based Learning}},
  volume = {42},
  year = {2012}
}
@inproceedings{sirin-2012,
  author = {\c{S}irin, U. and Erdo\u{g}du, U. and Polat, F. and Tan, M. and Alhajj, R.},
  booktitle = {{Proceedings of International Conference on Machine Learning and Applications (ICMLA)}},
  owner = {mehmet},
  timestamp = {2013.01.07},
  title = {{Effective Enrichment of Gene Expression Data Sets}},
  year = {2012}
}
@inproceedings{erdogdu-2011,
  author = {Erdo\u{g}du, U. and Tan, M. and Alhajj, R. and Polat, F. and Demetrick, D. and Rokne, J.},
  booktitle = {{Proceedings of IEEE International Conference on Bioinformatics \& Biomedicine (BIBM)}},
  doi = {10.1109/BIBM.2011.105},
  pages = {238--242},
  title = {{Employing Machine Learning Techniques for Data Enrichment: Increasing the number of samples for effective gene expression data analysis}},
  year = {2011}
}
@article{tan-2011,
  author = {Tan, M. and AlShalalfa, M. and Alhajj, R. and Polat, F.},
  doi = {10.1109/TCBB.2009.58},
  journal = {IEEE/ACM Transactions on Computational Biology and Bioinformatics},
  number = {1},
  pages = {130--142},
  title = {{Influence of Prior Knowledge in Constraint-Based Learning of Gene Regulatory Networks}},
  volume = {8},
  year = {2011}
}
@inproceedings{tan-2010,
  author = {Tan, M. and Alhajj, R. and Polat, F.},
  booktitle = {{Proceedings of IEEE International Conference on Bioinformatics \& Biomedicine (BIBM)}},
  doi = {10.1109/BIBM.2010.5706643},
  pages = {632--637},
  title = {{Feature Selection for Graph Kernels}},
  year = {2010}
}
@article{tan-2010-aiim,
  author = {Tan, M. and Alhajj, R. and Polat, F.},
  doi = {10.1016/j.artmed.2009.10.002},
  journal = {Artificial Intelligence in Medicine},
  number = {1},
  pages = {51--59},
  title = {{Scalable Approach for Effective Control of Gene Regulatory Networks}},
  volume = {48},
  year = {2010}
}
@article{tan-2010-smcb,
  author = {Tan, M. and Alhajj, R. and Polat, F.},
  doi = {10.1109/TSMCB.2009.2014736},
  journal = {IEEE Transactions on Systems, Man and Cybernetics, Part B},
  number = {2},
  pages = {286--297},
  title = {{Automated Large-Scale Control of Gene Regulatory Networks}},
  volume = {40},
  year = {2010}
}
@inproceedings{tan-2009,
  author = {Tan, M. and Polat, F. and Alhajj, R.},
  booktitle = {{Proceedings of IEEE International Conference on Bioinformatics \& Biomedicine (BIBM)}},
  doi = {10.1109/BIBM.2009.62},
  title = {{Derivation of Transcriptional Regulatory Relationships by Partial Least Squares Regression}},
  year = {2009}
}
@inproceedings{tan-2008,
  author = {Tan, M. and Alshalalfa, M. and Alhajj, R. and Polat, F.},
  booktitle = {{Proceedings of IEEE Fifth Symposium on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB)}},
  doi = {10.1109/CIBCB.2008.4675764},
  title = {{Combining Multiple Types of Biological Data in Constraint-Based Learning of Gene Regulatory Networks}},
  year = {2008}
}
@inproceedings{tan-2008b,
  author = {Tan, M. and Alhajj, R. and Polat, F.},
  booktitle = {{Proceedings of the IEEE Eighth International Symposium on Bioinformatics and Bioengineering (BIBE)}},
  doi = {10.1109/BIBE.2008.4696698},
  title = {{{L}arge-{S}cale {A}pproximate {I}ntervention {S}trategies for {P}robabilistic {B}oolean {N}etworks as {M}odels of {G}ene {R}egulation}},
  year = {2008}
}
@inproceedings{tan-2007,
  author = {Tan, M. and Polat, F. and Alhajj, R.},
  booktitle = {{Proceedings of the IEEE Seventh International Symposium on Bioinformatics and Bioengineering (BIBE)}},
  doi = {10.1109/BIBE.2007.4375727},
  title = {{Feature {R}eduction for {G}ene {R}egulatory {N}etwork {C}ontrol}},
  year = {2007}
}

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